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Computational Drug Repositioning and Elucidation of Mechanism of Action of Compounds against SARS-CoV-2
arXiv Year: 2020
Authors: Francesco Napolitano, Gennaro Gambardella, Xin Gao, Diego di Bernardo
  • SARS-CoV-2
  • COVID-19
Functional pangenome analysis suggests inhibition of the protein E as a readily available therapy for COVID-2019
Frontiers in Cellular and Infection Microbiology Year: 2020
Authors: Intikhab Alam, Allan Kamau, Maxat Kulmanov, Stefan T. Arold, Arnab Pain, Takashi Gojobori, Carlos Duarte
  • COVID-19
  • envelope protein (E)
  • therapeutic targets
  • ARDS (acute respiratory distress syndrome)
  • SARS-CoV-2
  • E protein Inhibitors
Prediction of novel virus–host interactions by integrating clinical symptoms and protein sequences
bioRxiv
Authors: Wang Liu-Wei, Şenay Kafkas, Jun Chen, Jesper Tegnér, Robert Hoehndorf
Assessing the age- and gender-dependence of the severity and case fatality rates of COVID-19 disease in Spain
Wellcome Open Research Year: 2020
Authors: Paula Moraga, David I. Ketcheson, Hernando C. Ombao, Carlos Duarte
  • COVID-19
  • epidemics
  • mortality
  • case fatality rate
  • age
  • gender
Estimating and forecasting COVID-19 attack rates and mortality
medRxiv
Authors: David I. Ketcheson, Hernando C. Ombao, Paula Moraga, Tarig Ballal, Carlos Duarte
A Rapid, Accurate and Machine-agnostic Segmentation and Quantification Method for CT-based COVID-19 Diagnosis
IEEE Transactions on Medical Imaging Year: 2020
Authors: Longxi Zhou, Zhongxiao Li, Juexiao Zhou, Haoyang Li, Yupeng Chen, Yuxin Huang, Dexuan Xie, Lintao Zhao, Ming Fan, Shahrukh Hashmi, Faisal AbdelKareem, Riham Eiada, Xigang Xiao, Lihua Li, Zhaowen Qiu, Xin Gao
  • COVID-19
  • deep learning
  • segmentation
  • computerized tomography
Multiplex Isothermal Amplification Coupled with Nanopore Sequencing for Rapid Detection and Mutation Surveillance of SARS-CoV-2
medRxiv Year: 2020
Authors: Chongwei Bi, Gerardo Ramos-Mandujano, Sharif Hala, Sara Mfarrej, Fadwa S Alofi, Asim Khogeer, Anwar M Hashem, Naif AM Almontashiri, Arnab Pain, Mo Li
Modeling quantitative traits for COVID-19 case reports
medRxiv Year: 2020
Authors: Nuria Queralt-Rosinach, Susan Bello, Robert Hoehndorf, Claus Weiland, Philippe Rocca-Serra, Paul N Schofield
COVID-19 lockdown allows researchers to quantify the effects of human activity on wildlife
Nature Ecology & Evolution Year: 2020
Authors: Christian Rutz, Matthias-Claudio Loretto, Amanda E. Bates, Sarah C. Davidson, Carlos Duarte, Walter Jetz, Mark Johnson, Akiko Kato, Roland Kays, Thomas Mueller, Richard B. Primack, Yan Ropert-Coudert, Marlee A. Tucker, Martin Wikelski, Francesca Cagnacci
  • Animal Behaviour
  • Animal Migration
  • Animal Physiology
  • Behavioural ecology
  • Conservation biology
  • Ecology
  • Ecosystem ecology
  • Environmental sciences
  • Evolutionary ecology
  • Macroecology
  • Population dynamics
  • Scientific community
  • Urban ecology
  • Zoology
Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics
Genome Biology Year: 2020
Authors: Hiroyuki Kuwahara, Nour Ewida, Hanan E. Shamseldin, Nisha Patel, Fatema Alzahrani, Tarfa AlSheddi,, Eman AlObeid, Mona Alenazi, Hessa S. Alsaif, Maha Alqahtani, Maha AlAli, Hatoon Al Ali, Rana Helaby, Niema Ibrahim, Firdous Abdulwahab, Mais Hashem, Nadine Hanna, Dorota Monies, Nada Derar, Afaf Alsagheir, Amal Alhashem, Badr Alsaleem, Hamoud Alhebbi, Sami Wali, Ramzan Umarov, Xin Gao, Fowzan S. Alkuraya
  • Negative WES
  • RNA-based diagnostics
  • Mapping
  • Mendelian
  • Transcriptomics
No Evidence for Temperature-Dependence of the COVID-19 Epidemic
Frontiers in Pubic Health Year: 2021
Authors: Tahira Jamil, Intikhab Alam, Takashi Gojobori, Carlos Duarte
  • COVID-19
  • epidemic
  • temperature
  • exponential rate
  • rt
A Robust, Safe and Scalable Magnetic Nanoparticle Workflow for RNA Extraction of Pathogens from Clinical and Environmental Samples
Global Challenges Year: 2021
Authors: Gerardo Ramos-Mandujano, Rahul Salunke, Sara Mfarrej, Andri Rachmadi, Sharif Hala, Jinna Xu, Fadwa S Alofi, Asim Khogeer, Anwar M Hashem, Naif AM Almontashiri, Afrah Alsomali, Samir Hamdan, Peiying Hong, Arnab Pain, Mo Li
  • influenza
  • Magnetic nanoparticles
  • SARS-CoV-2
  • nucleic acid purification
  • wastewater surveillance
Simultaneous Detection and Mutation Surveillance of SARS-CoV-2 and co-infections of multiple respiratory viruses by Rapid field-deployable sequencing
Year: 2021
Authors: Chongwei Bi, Gerardo Ramos-Mandujano, Yeteng Tian, Sara Mfarrej, Andri Rachmadi, Sharif Hala, Jinna Xu, Fadwa S Alofi, Asim Khogeer, Anwar M Hashem, Naif AM Almontashiri, Concepcion Rodriguez Esteban, Estrella Nuñez Delicado, Juan Carlos Izpisua Belmonte, Arnab Pain, Mo Li
  • SARS-CoV-2
  • nanopore sequencing
  • influenza
  • wastewater surveillance
  • co-infection
  • real-time pathogen detection
  • variant virus sequencing
  • mutation surveillance
  • adenovirus
  • isothermal amplification